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  5. LOC_Os05g38630.2

LOC_Os05g38630.2 (ATRABE1C, ATRAB8A,...)


Aliases : ATRABE1C, ATRAB8A, ARA-3, RAB8A, ARA3, LOC_Os05g38630

Description : E-class RAB GTPase


Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g38630.2

Target Alias Description ECC score Gene Family Method Actions
AT3G53610 ATRAB8,... RAB GTPase homolog 8 0.03 OrthoFinder output from all 47 species
Adi_g117529 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54700 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03105 ATRABE1D,... E-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g22475 ATRABE1E, ATRAB8E, RABE1e E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016596001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.04 OrthoFinder output from all 47 species
GSVIVT01025028001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.04 OrthoFinder output from all 47 species
GSVIVT01025619001 ATRABE1C,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Len_g58486 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02703 ATRABE1E, ATRAB8E, RABE1e E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g12190 ATRABE1D,... E-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11145 ATRABE1E, ATRAB8E, RABE1e E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010582 ATRABE1C,... not classified & original description: CDS=1-537 0.03 OrthoFinder output from all 47 species
Smo270274 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Smo437530 ATRABE1C,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Tin_g05828 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e033170_P001 ATRABE1C,... E-class RAB GTPase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 17 178
No external refs found!