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  5. LOC_Os05g38580.1

LOC_Os05g38580.1 (LOC_Os05g38580)


Aliases : LOC_Os05g38580

Description : component mtRPL17 of large ribosomal subunit proteome


Gene families : OG0002243 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002243_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g38580.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00266670 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
AT5G09770 No alias Ribosomal protein L17 family protein 0.02 OrthoFinder output from all 47 species
Adi_g008802 No alias component *(uL17m) of large mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0489.g073517 No alias component *(uL17m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os01g62210.1 LOC_Os01g62210 component mtRPL17 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Mp2g23260.1 No alias component mtRPL17 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Nbi_g00326 No alias component *(uL17m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014759 No alias component *(uL17m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Tin_g36318 No alias component *(uL17m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
BP GO:0007023 post-chaperonin tubulin folding pathway IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0048487 beta-tubulin binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR000456 Ribosomal_L17 17 111
No external refs found!