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  5. LOC_Os05g35330.1

LOC_Os05g35330.1 (RBCL, LOC_Os05g35330)


Aliases : RBCL, LOC_Os05g35330

Description : Ribulose bisphosphate carboxylase large chain OS=Oryza sativa subsp. indica (sp|p0c511|rbl_orysi : 273.0)


Gene families : OG0002607 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002607_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g35330.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.03 OrthoFinder output from all 47 species
AMTR_s00012p00184400 RBCL,... Ribulose bisphosphate carboxylase large chain... 0.03 OrthoFinder output from all 47 species
AMTR_s00606p00006850 RBCL,... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
ATCG00490 RBCL ribulose-bisphosphate carboxylases 0.03 OrthoFinder output from all 47 species
Aev_g01070 RBCL large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Azfi_s0033.g025103 No alias not classified & original description: CDS=1-594 0.02 OrthoFinder output from all 47 species
Cba_g06423 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ceric.02G014200.1 RBCL, Ceric.02G014200 large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ceric.16G059900.1 RBCL, Ceric.16G059900 not classified & original description: pacid=50589806... 0.05 OrthoFinder output from all 47 species
Ceric.29G033400.1 RBCL, Ceric.29G033400 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Ceric.38G006500.1 RBCL, Ceric.38G006500 large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Dcu_g16071 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ehy_g08300 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Gb_07644 RBCL Ribulose bisphosphate carboxylase large chain... 0.03 OrthoFinder output from all 47 species
Gb_15502 RBCL Ribulose bisphosphate carboxylase large chain... 0.03 OrthoFinder output from all 47 species
Gb_18620 RBCL Ribulose bisphosphate carboxylase large chain... 0.03 OrthoFinder output from all 47 species
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.03 OrthoFinder output from all 47 species
Gb_37464 RBCL Ribulose bisphosphate carboxylase large chain... 0.03 OrthoFinder output from all 47 species
Len_g01809 RBCL large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Lfl_g07296 RBCL large subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
MA_103636g0010 RBCL Ribulose bisphosphate carboxylase large chain... 0.02 OrthoFinder output from all 47 species
Mp3g01300.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g01544 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ppi_g08990 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002257 RBCL not classified & original description: CDS=1-450 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0313.g027218 RBCL not classified & original description: CDS=1-270 0.03 OrthoFinder output from all 47 species
Sam_g02085 No alias large subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Smo137874 RBCL Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Solyc00g500063.1.1 RBCL, Solyc00g500063 large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Solyc07g021200.1.1 RBCL, Solyc07g021200 Ribulose bisphosphate carboxylase large chain (Fragment)... 0.04 OrthoFinder output from all 47 species
Solyc12g062540.3.1 RBCL, Solyc12g062540 Ribulose bisphosphate carboxylase large chain (Fragment)... 0.05 OrthoFinder output from all 47 species
Spa_g17352 RBCL large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Tin_g43831 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Zm00001e002755_P001 RBCL, Zm00001e002755 Ribulose bisphosphate carboxylase large chain OS=Zea... 0.03 OrthoFinder output from all 47 species
Zm00001e031080_P001 RBCL, Zm00001e031080 Ribulose bisphosphate carboxylase large chain OS=Zea... 0.07 OrthoFinder output from all 47 species
Zm00001e042029_P001 RBCL, Zm00001e042029 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Zm00001e042051_P001 RBCL, Zm00001e042051 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Zm00001e042083_P001 RBCL, Zm00001e042083 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Zm00001e042095_P001 RBCL, Zm00001e042095 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Zm00001e042403_P001 RBCL, Zm00001e042403 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015977 carbon fixation IEA Interproscan
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR017443 RuBisCO_lsu_fd_N 24 144
No external refs found!