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  5. LOC_Os05g34160.1

LOC_Os05g34160.1 (LOC_Os05g34160)


Aliases : LOC_Os05g34160

Description : transcription factor (mTERF)


Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g34160.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00117910 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00230750 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00236880 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00239860 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
AMTR_s00084p00087230 PTAC15,... RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
AT1G62150 No alias Mitochondrial transcription termination factor family protein 0.03 OrthoFinder output from all 47 species
Aev_g02436 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04588 No alias mTERF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g07281 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12578 No alias mTERF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22741 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28440 EMB2219 mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17726 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10671 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene09179.t1 Aspi01Gene09179 mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64007.t1 Aspi01Gene64007 mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12846 No alias mTERF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g14738 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36413 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G060600.1 Ceric.05G060600 mTERF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G015700.1 Ceric.30G015700 mTERF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g12619 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18393 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02967 No alias mTERF-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g09151 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11284 PTAC15 mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22736 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g24025 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47138 PTAC15 mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10365 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07610 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13389 No alias mTERF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17694 PTAC15 mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022213001 No alias RNA biosynthesis.organelle... 0.02 OrthoFinder output from all 47 species
Gb_14091 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Gb_15878 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
Gb_26175 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Gb_26176 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Gb_35262 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
Len_g24851 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08103 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g26870 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10083329g0010 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
MA_192398g0010 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
MA_4552g0010 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
MA_493420g0010 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
MA_86824g0010 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
MA_92135g0010 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Nbi_g10336 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21234 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26508 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26624 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35894 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g33567 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g43606 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09613 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03790 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30682 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32507 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo403419 No alias RNA biosynthesis.organelle... 0.02 OrthoFinder output from all 47 species
Solyc04g072500.1.1 Solyc04g072500 transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
Solyc04g072540.3.1 Solyc04g072540 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Tin_g17278 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19485 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21097 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013884_P001 Zm00001e013884 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Zm00001e018154_P001 Zm00001e018154 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Zm00001e018894_P001 Zm00001e018894 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Zm00001e022322_P001 Zm00001e022322 transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR003690 MTERF 76 309
IPR003690 MTERF 244 317
No external refs found!