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  5. LOC_Os05g33020.1

LOC_Os05g33020.1 (SCY2, EMB2289, LOC_Os05g33020)


Aliases : SCY2, EMB2289, LOC_Os05g33020

Description : component SecY2 of inner envelope Sec2 post-import insertion system


Gene families : OG0005693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005693_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g33020.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00237300 SCY2, EMB2289,... Protein translocation.chloroplast.inner envelope Sec2... 0.04 OrthoFinder output from all 47 species
AT2G31530 SCY2, EMB2289 SecY protein transport family protein 0.02 OrthoFinder output from all 47 species
Adi_g058257 SCY2, EMB2289 component *(SecY2) of inner envelope Sec2 post-import... 0.02 OrthoFinder output from all 47 species
Ceric.25G055200.1 SCY2, EMB2289,... component *(SecY2) of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
Cre03.g158250 SCY2, EMB2289 No description available 0.02 OrthoFinder output from all 47 species
Dde_g03448 SCY2, EMB2289 component *(SecY2) of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
GSVIVT01011128001 SCY2, EMB2289 Protein translocation.chloroplast.inner envelope Sec2... 0.04 OrthoFinder output from all 47 species
Gb_28420 SCY2, EMB2289 component SecY2 of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
Len_g13849 SCY2, EMB2289 component *(SecY2) of inner envelope Sec2 post-import... 0.02 OrthoFinder output from all 47 species
Lfl_g26069 SCY2, EMB2289 component *(SecY2) of inner envelope Sec2 post-import... 0.02 OrthoFinder output from all 47 species
Mp1g27500.1 SCY2, EMB2289 component SecY2 of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
Msp_g24458 SCY2, EMB2289 component *(SecY2) of inner envelope Sec2 post-import... 0.02 OrthoFinder output from all 47 species
Ore_g29035 SCY2, EMB2289 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31235 SCY2, EMB2289 component *(SecY2) of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
Sam_g27421 No alias component *(SecY2) of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
Sam_g27422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo74191 SCY2, EMB2289 Protein translocation.chloroplast.inner envelope Sec2... 0.02 OrthoFinder output from all 47 species
Solyc09g065120.4.1 SCY2, EMB2289,... component SecY2 of inner envelope Sec2 post-import... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002208 SecY/SEC61-alpha 173 520
No external refs found!