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  5. LOC_Os05g30240.1

LOC_Os05g30240.1 (GRP23, LOC_Os05g30240)


Aliases : GRP23, LOC_Os05g30240

Description : Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana (sp|q9sy69|ppr29_arath : 397.0)


Gene families : OG0010708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010708_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g30240.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00236970 emb1796,... Pentatricopeptide repeat-containing protein At3g49240,... 0.03 OrthoFinder output from all 47 species
AT3G49240 emb1796 Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
GSVIVT01023159001 GRP23 Pentatricopeptide repeat-containing protein At1g10270... 0.03 OrthoFinder output from all 47 species
Gb_33759 GRP23 Pentatricopeptide repeat-containing protein At3g49240,... 0.07 OrthoFinder output from all 47 species
LOC_Os11g24570.1 emb1796, LOC_Os11g24570 Pentatricopeptide repeat-containing protein At3g49240,... 0.03 OrthoFinder output from all 47 species
MA_118904g0010 emb1796 Pentatricopeptide repeat-containing protein At1g10270... 0.04 OrthoFinder output from all 47 species
Solyc01g103160.3.1 GRP23, Solyc01g103160 Pentatricopeptide repeat-containing protein At1g10270... 0.09 OrthoFinder output from all 47 species
Solyc03g083280.4.1 emb1796, Solyc03g083280 Pentatricopeptide repeat-containing protein At3g49240,... 0.05 OrthoFinder output from all 47 species
Zm00001e004732_P001 GRP23, Zm00001e004732 Pentatricopeptide repeat-containing protein At1g10270... 0.05 OrthoFinder output from all 47 species
Zm00001e020614_P001 emb1796, Zm00001e020614 Pentatricopeptide repeat-containing protein At3g49240,... 0.08 OrthoFinder output from all 47 species
Zm00001e032163_P001 emb1796, Zm00001e032163 Pentatricopeptide repeat-containing protein At3g49240,... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 399 446
IPR002885 Pentatricopeptide_repeat 182 230
IPR002885 Pentatricopeptide_repeat 367 390
IPR002885 Pentatricopeptide_repeat 476 502
IPR002885 Pentatricopeptide_repeat 149 172
IPR002885 Pentatricopeptide_repeat 257 284
IPR002885 Pentatricopeptide_repeat 503 534
No external refs found!