Aliases : GRP23, LOC_Os05g30240
Description : Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana (sp|q9sy69|ppr29_arath : 397.0)
Gene families : OG0010708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010708_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00021p00236970 | emb1796,... | Pentatricopeptide repeat-containing protein At3g49240,... | 0.03 | OrthoFinder output from all 47 species | |
AT3G49240 | emb1796 | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01023159001 | GRP23 | Pentatricopeptide repeat-containing protein At1g10270... | 0.03 | OrthoFinder output from all 47 species | |
Gb_33759 | GRP23 | Pentatricopeptide repeat-containing protein At3g49240,... | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os11g24570.1 | emb1796, LOC_Os11g24570 | Pentatricopeptide repeat-containing protein At3g49240,... | 0.03 | OrthoFinder output from all 47 species | |
MA_118904g0010 | emb1796 | Pentatricopeptide repeat-containing protein At1g10270... | 0.04 | OrthoFinder output from all 47 species | |
Solyc01g103160.3.1 | GRP23, Solyc01g103160 | Pentatricopeptide repeat-containing protein At1g10270... | 0.09 | OrthoFinder output from all 47 species | |
Solyc03g083280.4.1 | emb1796, Solyc03g083280 | Pentatricopeptide repeat-containing protein At3g49240,... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e004732_P001 | GRP23, Zm00001e004732 | Pentatricopeptide repeat-containing protein At1g10270... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e020614_P001 | emb1796, Zm00001e020614 | Pentatricopeptide repeat-containing protein At3g49240,... | 0.08 | OrthoFinder output from all 47 species | |
Zm00001e032163_P001 | emb1796, Zm00001e032163 | Pentatricopeptide repeat-containing protein At3g49240,... | 0.08 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001510 | RNA methylation | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006400 | tRNA modification | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0030488 | tRNA methylation | IEP | HCCA |
CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
CC | GO:0034708 | methyltransferase complex | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
CC | GO:0043527 | tRNA methyltransferase complex | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 399 | 446 |
IPR002885 | Pentatricopeptide_repeat | 182 | 230 |
IPR002885 | Pentatricopeptide_repeat | 367 | 390 |
IPR002885 | Pentatricopeptide_repeat | 476 | 502 |
IPR002885 | Pentatricopeptide_repeat | 149 | 172 |
IPR002885 | Pentatricopeptide_repeat | 257 | 284 |
IPR002885 | Pentatricopeptide_repeat | 503 | 534 |
No external refs found! |