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  5. LOC_Os05g25560.1

LOC_Os05g25560.1 (LOC_Os05g25560)


Aliases : LOC_Os05g25560

Description : endo-beta-1,4-xylanase


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g25560.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00056140 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G58370 ATXYN1, RXF12 glycosyl hydrolase family 10 protein /... 0.03 OrthoFinder output from all 47 species
AT2G14690 No alias Glycosyl hydrolase superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G08160 No alias glycosyl hydrolase family 10 protein /... 0.02 OrthoFinder output from all 47 species
AT4G33820 No alias Glycosyl hydrolase superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G33840 No alias Glycosyl hydrolase family 10 protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene04570.t1 Aspi01Gene04570 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g05144 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g37891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037825001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01037832001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01037833001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_02219 No alias no description available(sp|q84wt5|xyn5l_arath : 355.0) 0.03 OrthoFinder output from all 47 species
Msp_g31883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g105500.4.1 Solyc01g105500 no description available(sp|a0a1p8b8f8|xyn5_arath : 393.0) 0.03 OrthoFinder output from all 47 species
Solyc01g106990.2.1 Solyc01g106990 no description available(sp|q84wt5|xyn5l_arath : 338.0) 0.02 OrthoFinder output from all 47 species
Solyc04g077190.4.1 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
Solyc10g055370.2.1 Solyc10g055370 no description available(sp|a0a1p8b8f8|xyn5_arath : 301.0) 0.03 OrthoFinder output from all 47 species
Zm00001e000757_P001 Zm00001e000757 no description available(sp|q84wt5|xyn5l_arath : 397.0) 0.02 OrthoFinder output from all 47 species
Zm00001e001013_P003 Zm00001e001013 no description available(sp|q84wt5|xyn5l_arath : 305.0) 0.03 OrthoFinder output from all 47 species
Zm00001e016992_P001 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
Zm00001e016997_P001 Zm00001e016997 endo-beta-1,4-xylanase 0.02 OrthoFinder output from all 47 species
Zm00001e038772_P001 Zm00001e038772 no description available(sp|q84wt5|xyn5l_arath : 392.0) 0.02 OrthoFinder output from all 47 species
Zm00001e038773_P006 Zm00001e038773 no description available(sp|q84wt5|xyn5l_arath : 388.0) 0.03 OrthoFinder output from all 47 species
Zm00001e040632_P001 Zm00001e040632 no description available(sp|q680b7|xyn4_arath : 318.0) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001000 GH10_dom 238 505
No external refs found!