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  5. LOC_Os05g23924.1

LOC_Os05g23924.1 (LOC_Os05g23924)


Aliases : LOC_Os05g23924

Description : no description available(sp|q84wt5|xyn5l_arath : 299.0)


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g23924.1

Target Alias Description ECC score Gene Family Method Actions
AT1G58370 ATXYN1, RXF12 glycosyl hydrolase family 10 protein /... 0.03 OrthoFinder output from all 47 species
AT2G14690 No alias Glycosyl hydrolase superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G08160 No alias glycosyl hydrolase family 10 protein /... 0.04 OrthoFinder output from all 47 species
Azfi_s0207.g057923 No alias not classified & original description: CDS=1-1875 0.05 OrthoFinder output from all 47 species
GSVIVT01037825001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01037832001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01037833001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_13086 ATXYN1, RXF12 endo-beta-1,4-xylanase 0.03 OrthoFinder output from all 47 species
LOC_Os03g10440.1 LOC_Os03g10440 no description available(sp|a0a1p8b8f8|xyn5_arath : 380.0) 0.04 OrthoFinder output from all 47 species
LOC_Os07g27320.1 LOC_Os07g27320 endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
MA_8357324g0010 No alias no description available(sp|a0a1p8awh8|xyn1_arath : 98.6) 0.03 OrthoFinder output from all 47 species
Solyc10g055370.2.1 Solyc10g055370 no description available(sp|a0a1p8b8f8|xyn5_arath : 301.0) 0.03 OrthoFinder output from all 47 species
Zm00001e000757_P001 Zm00001e000757 no description available(sp|q84wt5|xyn5l_arath : 397.0) 0.02 OrthoFinder output from all 47 species
Zm00001e001013_P003 Zm00001e001013 no description available(sp|q84wt5|xyn5l_arath : 305.0) 0.07 OrthoFinder output from all 47 species
Zm00001e016992_P001 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.05 OrthoFinder output from all 47 species
Zm00001e040632_P001 Zm00001e040632 no description available(sp|q680b7|xyn4_arath : 318.0) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
InterPro domains Description Start Stop
IPR001000 GH10_dom 229 493
No external refs found!