LOC_Os05g14590.1 (MCM6, LOC_Os05g14590)

Aliases : MCM6, LOC_Os05g14590

Description : component MCM6 of MCM replicative DNA helicase complex

Gene families : OG0006617 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006617_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g14590.1
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00194270	MCM6,...	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.08	OrthoFinder output from all 47 species
AT5G44635	MCM6	minichromosome maintenance (MCM2/3/5) family protein	0.03	OrthoFinder output from all 47 species
Ala_g26836	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.05	OrthoFinder output from all 47 species
Als_g05373	MCM6	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g06769	MCM6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g39726	MCM6	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aop_g08840	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
Aspi01Gene04386.t1	MCM6, Aspi01Gene04386	component *(MCM6) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
Azfi_s0167.g054494	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.06	OrthoFinder output from all 47 species
Ceric.09G019700.1	MCM6, Ceric.09G019700	component *(MCM6) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020918.5	MCM6	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.09	OrthoFinder output from all 47 species
Cre03.g178650	MCM6	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.08	OrthoFinder output from all 47 species
Dac_g15310	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Dcu_g41685	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
GSVIVT01003253001	MCM6	DNA replication licensing factor MCM6 OS=Arabidopsis thaliana	0.13	OrthoFinder output from all 47 species
Gb_23970	MCM6	component MCM6 of MCM replicative DNA helicase complex	0.14	OrthoFinder output from all 47 species
Len_g31435	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
MA_15713g0010	MCM6	component MCM6 of MCM replicative DNA helicase complex	0.12	OrthoFinder output from all 47 species
Mp4g14930.1	MCM6	component MCM6 of MCM replicative DNA helicase complex	0.11	OrthoFinder output from all 47 species
Msp_g06026	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Nbi_g01354	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Ore_g26167	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
Ppi_g04649	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006902	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Sam_g08416	No alias	component *(MCM6) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Spa_g10325	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Spa_g43721	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
Tin_g10680	MCM6	component *(MCM6) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
Zm00001e027149_P002	MCM6, Zm00001e027149	component MCM6 of MCM replicative DNA helicase complex	0.19	OrthoFinder output from all 47 species
Zm00001e031306_P002	MCM6, Zm00001e031306	component MCM6 of MCM replicative DNA helicase complex	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006270	DNA replication initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
CC	GO:0031262	Ndc80 complex	IEP	HCCA
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
BP	GO:0043086	negative regulation of catalytic activity	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
BP	GO:0043462	regulation of ATP-dependent activity	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051095	regulation of helicase activity	IEP	HCCA
BP	GO:0051097	negative regulation of helicase activity	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905774	regulation of DNA helicase activity	IEP	HCCA
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	HCCA
BP	GO:2001251	negative regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR033762	MCM_OB	124	252
IPR027925	MCM_N	19	117
IPR041024	Mcm6_C	713	829
IPR001208	MCM_dom	337	559
IPR041562	MCM_lid	574	659

External Links

No external refs found!

LOC_Os05g14590.1 (MCM6, LOC_Os05g14590)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation