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  5. LOC_Os05g08600.2

LOC_Os05g08600.2 (ATSRL1, LOC_Os05g08600)


Aliases : ATSRL1, LOC_Os05g08600

Description : Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana (sp|q8rwb1|srl1_arath : 390.0)


Gene families : OG0003543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003543_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g08600.2

Target Alias Description ECC score Gene Family Method Actions
Adi_g107782 ATSRL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene26698.t1 ATSRL1, Aspi01Gene26698 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g32915 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo234158 ATSRL1 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Zm00001e036528_P001 ATSRL1, Zm00001e036528 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
CC GO:0017053 transcription repressor complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0050080 malonyl-CoA decarboxylase activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR005037 PRP38 7 161
No external refs found!