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  5. LOC_Os05g05310.2

LOC_Os05g05310.2 (VIL1, VRN5, LOC_Os05g05310)


Aliases : VIL1, VRN5, LOC_Os05g05310

Description : PRC2-VRN-interacting PHD protein (VIN3|VRN5)


Gene families : OG0001143 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g05310.2

Target Alias Description ECC score Gene Family Method Actions
AT4G30200 VEL1, VIL2 vernalization5/VIN3-like 0.04 OrthoFinder output from all 47 species
Aob_g11986 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Aob_g26103 VIL1, VRN5 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Aspi01Gene37438.t1 VEL1, VIL2,... PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.04 OrthoFinder output from all 47 species
Aspi01Gene56772.t1 VEL1, VIL2,... PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Aspi01Gene66156.t1 VEL1, VIL2,... PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012327 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.05 OrthoFinder output from all 47 species
Ceric.19G072900.1 VEL1, VIL2,... PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.04 OrthoFinder output from all 47 species
Dcu_g22153 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Dde_g11907 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
GSVIVT01035732001 VIL1, VRN5 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Gb_38075 VEL1, VIL2 PRC2-VRN-interacting PHD protein (VIN3|VRN5) 0.02 OrthoFinder output from all 47 species
Lfl_g02158 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Pir_g43802 VIL1, VRN5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09444 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Pnu_g27823 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Ppi_g02323 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009640 VIL1, VRN5 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Spa_g02450 VIL1, VRN5 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Tin_g13319 VEL1, VIL2 PRC2-VRN-interacTing factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Zm00001e039731_P002 VIL1, VRN5,... PRC2-VRN-interacting PHD protein (VIN3|VRN5) 0.03 OrthoFinder output from all 47 species
Zm00001e040024_P001 VEL1, VIL2,... PRC2-VRN-interacting PHD protein (VIN3|VRN5) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005047 signal recognition particle binding IEP HCCA
CC GO:0005785 signal recognition particle receptor complex IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008104 protein localization IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR032881 Oberon_PHD 43 171
IPR003961 FN3_dom 252 333
No external refs found!