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  5. LOC_Os05g05260.1

LOC_Os05g05260.1 (UVH6, ATXPD, LOC_Os05g05260)


Aliases : UVH6, ATXPD, LOC_Os05g05260

Description : subunit XPD of multifunctional TFIIh complex. component XPD of TFIIh basal transcription factor complex


Gene families : OG0004711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g05260.1
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Aop_g10551 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species
Dcu_g07727 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Ehy_g17708 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species
Mp6g12580.1 UVH6, ATXPD subunit XPD of multifunctional TFIIh complex. component... 0.03 OrthoFinder output from all 47 species
Pir_g08831 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species
Solyc06g008970.4.1 UVH6, ATXPD,... subunit XPD of multifunctional TFIIh complex. component... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003678 DNA helicase activity IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006555 ATP-dep_Helicase_C 527 700
IPR010614 DEAD_2 72 259
IPR010643 HBB 273 415
No external refs found!