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  5. LOC_Os05g03140.1

LOC_Os05g03140.1 (TET4, LOC_Os05g03140)


Aliases : TET4, LOC_Os05g03140

Description : Tetraspanin-3 OS=Arabidopsis thaliana (sp|q9m1e7|tet3_arath : 324.0)


Gene families : OG0000199 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000199_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g03140.1

Target Alias Description ECC score Gene Family Method Actions
AT4G23410 TET5 tetraspanin5 0.03 OrthoFinder output from all 47 species
AT5G46700 TET1, TRN2 Tetraspanin family protein 0.03 OrthoFinder output from all 47 species
Ala_g21756 TET1, TRN2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14453 TET8 regulatory protein *(TET8/9) of extracellular vesicle... 0.03 OrthoFinder output from all 47 species
LOC_Os08g34460.1 TET8, LOC_Os08g34460 Tetraspanin-8 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Smo231326 TET4 Tetraspanin-3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc07g006280.3.1 TET8, Solyc07g006280 Tetraspanin-8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc07g025510.4.1 TET2, Solyc07g025510 Tetraspanin-2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g14963 TET8 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e028243_P001 TET6, Zm00001e028243 Tetraspanin-6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e029484_P001 TET6, Zm00001e029484 Tetraspanin-6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018499 Tetraspanin/Peripherin 8 264
No external refs found!