Aliases : WOX3, PRS1, PRS, LOC_Os05g02730
Description : transcription factor (WOX)
Gene families : OG0001319 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001319_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os05g02730.1 | |
Cluster | HCCA: Cluster_95 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00012p00149750 | WOX2,... | RNA biosynthesis.transcriptional activation.HB... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00021p00189010 | STIP, HB-3,... | RNA biosynthesis.transcriptional activation.HB... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00023p00181320 | WOX3, PRS1, PRS,... | RNA biosynthesis.transcriptional activation.HB... | 0.03 | OrthoFinder output from all 47 species | |
AT1G46480 | WOX4 | WUSCHEL related homeobox 4 | 0.03 | OrthoFinder output from all 47 species | |
AT2G01500 | PFS2, HOS9, WOX6 | Homeodomain-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
AT2G28610 | WOX3, PRS1, PRS | Homeodomain-like superfamily protein | 0.13 | OrthoFinder output from all 47 species | |
AT2G33880 | STIP, HB-3, WOX9 | homeobox-3 | 0.04 | OrthoFinder output from all 47 species | |
AT3G11260 | WOX5 | WUSCHEL related homeobox 5 | 0.03 | OrthoFinder output from all 47 species | |
AT3G18010 | WOX1 | WUSCHEL related homeobox 1 | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0123.g048427 | STIP, HB-3, WOX9 | WOX-type transcription factor & original description: CDS=1-1377 | 0.01 | OrthoFinder output from all 47 species | |
Ceric.19G009000.1 | STIP, HB-3,... | WOX-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.19G009200.1 | STPL, WOX8,... | WOX-type transcription factor & original description:... | 0.06 | OrthoFinder output from all 47 species | |
Ceric.27G012000.1 | WUS, PGA6, WUS1,... | WOX-type transcription factor & original description:... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.32G042100.1 | STPL, WOX8,... | WOX-type transcription factor & original description:... | 0.01 | OrthoFinder output from all 47 species | |
Dcu_g33241 | STPL, WOX8 | WOX-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dde_g30680 | STIP, HB-3, WOX9 | WOX-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01008424001 | WOX1 | RNA biosynthesis.transcriptional activation.HB... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01011738001 | WOX1 | RNA biosynthesis.transcriptional activation.HB... | 0.03 | OrthoFinder output from all 47 species | |
Gb_27283 | WOX3, PRS1, PRS | transcription factor (WOX) | 0.05 | OrthoFinder output from all 47 species | |
MA_10234279g0010 | STPL, WOX8 | transcription factor (WOX) | 0.02 | OrthoFinder output from all 47 species | |
MA_10344604g0010 | STIP, HB-3, WOX9 | transcription factor (WOX) | 0.03 | OrthoFinder output from all 47 species | |
MA_42637g0010 | WOX2 | transcription factor (WOX) | 0.02 | OrthoFinder output from all 47 species | |
MA_8832398g0010 | WOX2 | transcription factor (WOX) | 0.04 | OrthoFinder output from all 47 species | |
MA_921642g0010 | WOX1 | transcription factor (WOX) | 0.03 | OrthoFinder output from all 47 species | |
Msp_g29674 | STIP, HB-3, WOX9 | WOX-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0053.g014086 | STPL, WOX8 | WOX-type transcription factor & original description: CDS=1-2016 | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g083950.3.1 | WUS, PGA6, WUS1,... | transcription factor (WOX) | 0.02 | OrthoFinder output from all 47 species | |
Solyc03g118770.4.1 | WOX1, Solyc03g118770 | transcription factor (WOX) | 0.02 | OrthoFinder output from all 47 species | |
Solyc06g075567.1.1 | WOX3, PRS1, PRS,... | transcription factor (WOX) | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e006644_P002 | WUS, PGA6, WUS1,... | transcription factor (WOX) | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e009121_P001 | WOX3, PRS1, PRS,... | transcription factor (WOX) | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e019245_P001 | WOX5, Zm00001e019245 | transcription factor (WOX) | 0.01 | OrthoFinder output from all 47 species | |
Zm00001e024169_P001 | WOX3, PRS1, PRS,... | transcription factor (WOX) | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e024170_P001 | Zm00001e024170 | WUSCHEL-related homeobox 3B OS=Zea mays... | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e028720_P001 | WOX5, Zm00001e028720 | transcription factor (WOX) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e029534_P001 | WOX3, PRS1, PRS,... | transcription factor (WOX) | 0.11 | OrthoFinder output from all 47 species | |
Zm00001e032433_P003 | STIP, HB-3,... | transcription factor (WOX) | 0.12 | OrthoFinder output from all 47 species | |
Zm00001e041785_P001 | WOX4, Zm00001e041785 | transcription factor (WOX) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000723 | telomere maintenance | IEP | HCCA |
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006950 | response to stress | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0016043 | cellular component organization | IEP | HCCA |
CC | GO:0018995 | host cellular component | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0032200 | telomere organization | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
CC | GO:0033643 | host cell part | IEP | HCCA |
CC | GO:0033646 | host intracellular part | IEP | HCCA |
CC | GO:0033647 | host intracellular organelle | IEP | HCCA |
CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
CC | GO:0042025 | host cell nucleus | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0046983 | protein dimerization activity | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0050896 | response to stimulus | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001356 | Homeobox_dom | 26 | 85 |
No external refs found! |