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  5. LOC_Os05g02680.1

LOC_Os05g02680.1 (LOC_Os05g02680)


Aliases : LOC_Os05g02680

Description : no hits & (original description: none)


Gene families : OG0001406 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001406_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g02680.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00182890 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT3G45830 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.04 OrthoFinder output from all 47 species
Adi_g078662 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108051 No alias component *(NFRKB2) of INO80 chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Aev_g18222 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g17664 No alias component *(NFRKB3) of INO80 chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Azfi_s0050.g031106 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Ceric.04G027000.1 Ceric.04G027000 component *(NFRKB1) of INO80 chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Ceric.05G054400.1 Ceric.05G054400 component *(NFRKB1) of INO80 chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ceric.20G007800.1 Ceric.20G007800 component *(NFRKB1) of INO80 chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000237.41 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g06991 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dac_g22056 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Dcu_g08309 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.04 OrthoFinder output from all 47 species
GSVIVT01025073001 No alias No description available 0.08 OrthoFinder output from all 47 species
Gb_27287 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g04834 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Lfl_g05016 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.07 OrthoFinder output from all 47 species
Nbi_g25949 No alias component *(NFRKB2) of INO80 chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ore_g15372 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Pir_g13602 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Pir_g16585 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Pnu_g20726 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ppi_g05304 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Sam_g08339 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Sam_g08446 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Sam_g29794 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Solyc11g072810.2.1 Solyc11g072810 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Spa_g47099 No alias component *(NFRKB1) of INO80 chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Tin_g05646 No alias component *(NFRKB1) of INO80 chromaTin remodeling... 0.04 OrthoFinder output from all 47 species
Zm00001e027598_P001 Zm00001e027598 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e029533_P001 Zm00001e029533 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!