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  5. LOC_Os05g02260.1

LOC_Os05g02260.1 (LOC_Os05g02260)


Aliases : LOC_Os05g02260

Description : no hits & (original description: none)


Gene families : OG0002152 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002152_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g02260.1
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Adi_g088254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_41496 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g03760 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17059 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g086360.2.1 Solyc10g086360 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA

No InterPro domains available for this sequence

No external refs found!