1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os05g01910.1

LOC_Os05g01910.1 (PUM1, APUM1, LOC_Os05g01910)


Aliases : PUM1, APUM1, LOC_Os05g01910

Description : Pumilio homolog 2 OS=Arabidopsis thaliana (sp|q9zw06|pum2_arath : 704.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g01910.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.02 OrthoFinder output from all 47 species
Adi_g016234 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07515.t1 APUM4, PUM4,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0205.g057726 APUM2, PUM2 not classified & original description: CDS=300-3455 0.03 OrthoFinder output from all 47 species
Ceric.28G015200.1 APUM2, PUM2,... not classified & original description: pacid=50571040... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.15 PUM5, APUM5 No description available 0.01 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_30040 APUM6, PUM6 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g12747 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_23070g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g29158 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43012 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c16_13520V3.1 Pp3c16_13520 pumilio 2 0.01 OrthoFinder output from all 47 species
Ppi_g36029 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0253.g026782 APUM2, PUM2 not classified & original description: CDS=660-3872 0.03 OrthoFinder output from all 47 species
Sam_g16358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26562 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 322 544
IPR012940 NABP 217 345
IPR001313 Pumilio_RNA-bd_rpt 691 723
IPR001313 Pumilio_RNA-bd_rpt 584 613
IPR001313 Pumilio_RNA-bd_rpt 656 686
IPR001313 Pumilio_RNA-bd_rpt 762 794
IPR001313 Pumilio_RNA-bd_rpt 618 648
IPR001313 Pumilio_RNA-bd_rpt 806 838
IPR001313 Pumilio_RNA-bd_rpt 546 579
IPR001313 Pumilio_RNA-bd_rpt 727 757
No external refs found!