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  5. LOC_Os05g01450.1

LOC_Os05g01450.1 (EIF2, AteIF3f, eIF3F,...)


Aliases : EIF2, AteIF3f, eIF3F, LOC_Os05g01450

Description : component eIF3f of eIF3 mRNA-to-PIC binding complex


Gene families : OG0004531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g01450.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00121720 EIF2, AteIF3f,... Protein biosynthesis.translation... 0.07 OrthoFinder output from all 47 species
AT2G39990 EIF2, AteIF3f, eIF3F eukaryotic translation initiation factor 2 0.04 OrthoFinder output from all 47 species
Adi_g020869 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Aop_g13170 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Azfi_s0754.g085338 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.06 OrthoFinder output from all 47 species
Ceric.19G025600.1 EIF2, AteIF3f,... component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001355.7 EIF2, AteIF3f, eIF3F Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Cre16.g654500 EIF2, AteIF3f, eIF3F Protein biosynthesis.translation... 0.07 OrthoFinder output from all 47 species
Dcu_g43958 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Dde_g35680 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g19884 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Ehy_g25623 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Gb_36251 EIF2, AteIF3f, eIF3F component eIF3f of eIF3 mRNA-to-PIC binding complex 0.08 OrthoFinder output from all 47 species
Lfl_g01078 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Mp5g18020.1 EIF2, AteIF3f, eIF3F component eIF3f of eIF3 mRNA-to-PIC binding complex 0.18 OrthoFinder output from all 47 species
Nbi_g04161 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.07 OrthoFinder output from all 47 species
Pir_g59618 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Sam_g52178 No alias component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Smo79764 EIF2, AteIF3f, eIF3F Protein biosynthesis.translation... 0.05 OrthoFinder output from all 47 species
Solyc05g052690.4.1 EIF2, AteIF3f,... component eIF3f of eIF3 mRNA-to-PIC binding complex 0.02 OrthoFinder output from all 47 species
Solyc11g013440.2.1 EIF2, AteIF3f,... component eIF3f of eIF3 mRNA-to-PIC binding complex 0.09 OrthoFinder output from all 47 species
Spa_g09311 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e027674_P001 EIF2, AteIF3f,... component eIF3f of eIF3 mRNA-to-PIC binding complex 0.04 OrthoFinder output from all 47 species
Zm00001e029699_P001 EIF2, AteIF3f,... component eIF3f of eIF3 mRNA-to-PIC binding complex 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 16 123
IPR024969 Rpn11/EIF3F_C 171 277
No external refs found!