- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LOC_Os04g59510
Description : PHD finger transcription factor
Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00004p00050160 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.PHD finger... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00146p00080830 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.PHD finger... | 0.05 | OrthoFinder output from all 47 species | |
| AT3G14980 | No alias | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g057776 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g08216 | No alias | component *(IDM1) of ROS1-recruitment complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g20182 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g20272 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g23026 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g32072 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene15069.t1 | Aspi01Gene15069 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene25983.t1 | Aspi01Gene25983 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0253.g060397 | No alias | not classified & original description: CDS=132-3128 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G075300.1 | Ceric.04G075300 | not classified & original description: pacid=50631416... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.19G070400.1 | Ceric.19G070400 | not classified & original description: pacid=50576012... | 0.03 | OrthoFinder output from all 47 species | |
| Cre08.g386000 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g10239 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g16965 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g50149 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g09265 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g10038 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01014219001 | No alias | RNA biosynthesis.transcriptional activation.PHD finger... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01017972001 | No alias | RNA biosynthesis.transcriptional activation.PHD finger... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_06644 | No alias | component IDM1 of ROS1-recruitment complex. PHD finger... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g59746 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g12951 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_14500g0010 | No alias | component IDM1 of ROS1-recruitment complex. PHD finger... | 0.02 | OrthoFinder output from all 47 species | |
| MA_3931g0010 | No alias | PHD finger transcription factor | 0.02 | OrthoFinder output from all 47 species | |
| Mp6g21090.2 | No alias | PHD finger transcription factor | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g13348 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g29122 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g18818 | No alias | component *(IDM1) of ROS1-recruitment complex & original... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g06867 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g16242 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g08484 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g41948 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0015.g006562 | No alias | not classified & original description: CDS=201-3710 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g16192 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g005170.3.1 | Solyc03g005170 | PHD finger transcription factor | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g065340.3.1 | Solyc09g065340 | PHD finger transcription factor | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g50990 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g20194 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e005667_P001 | Zm00001e005667 | PHD finger transcription factor | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e012046_P003 | Zm00001e012046 | PHD finger transcription factor | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e032904_P002 | Zm00001e032904 | PHD finger transcription factor | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e042012_P001 | Zm00001e042012 | component IDM1 of ROS1-recruitment complex. PHD finger... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
| MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
| MF | GO:0004519 | endonuclease activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| CC | GO:0005783 | endoplasmic reticulum | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
| BP | GO:0007017 | microtubule-based process | IEP | HCCA |
| BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
| MF | GO:0008017 | microtubule binding | IEP | HCCA |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
| BP | GO:0008104 | protein localization | IEP | HCCA |
| BP | GO:0015031 | protein transport | IEP | HCCA |
| MF | GO:0015631 | tubulin binding | IEP | HCCA |
| BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| CC | GO:0030117 | membrane coat | IEP | HCCA |
| CC | GO:0030120 | vesicle coat | IEP | HCCA |
| CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0033036 | macromolecule localization | IEP | HCCA |
| MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
| BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
| BP | GO:0071702 | organic substance transport | IEP | HCCA |
| BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR019787 | Znf_PHD-finger | 8 | 49 |
| No external refs found! |