LOC_Os04g58410.1 (LOC_Os04g58410)

Aliases : LOC_Os04g58410

Description : DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana (sp|o65607|msh3_arath : 86.7)

Gene families : OG0002233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002233_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g58410.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00265580	evm_27.TU.AmTr_v1...	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AMTR_s00018p00168540	evm_27.TU.AmTr_v1...	DNA mismatch repair protein MSH1, mitochondrial...	0.04	OrthoFinder output from all 47 species
Ala_g09056	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g04468	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g11010	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0068.g036437	No alias	not classified & original description: CDS=249-2714	0.02	OrthoFinder output from all 47 species
Cba_g24484	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.34G068900.1	Ceric.34G068900	not classified & original description: pacid=50624175...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.149	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dcu_g10860	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g11218	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g07894	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12779	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Len_g03377	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g02342	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_263724g0010	No alias	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp2g11550.1	No alias	DNA mismatch repair protein MSH1, mitochondrial...	0.08	OrthoFinder output from all 47 species
Ore_g15710	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g19502	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Pir_g16765	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g13786	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo141299	No alias	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Smo421325	No alias	No description available	0.04	OrthoFinder output from all 47 species
Solyc02g078390.3.1	Solyc02g078390	DNA mismatch repair protein MSH1, mitochondrial...	0.04	OrthoFinder output from all 47 species
Zm00001e006512_P001	Zm00001e006512	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0004325	ferrochelatase activity	IEP	HCCA
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	HCCA
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034755	iron ion transmembrane transport	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046168	glycerol-3-phosphate catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0052646	alditol phosphate metabolic process	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000432	DNA_mismatch_repair_MutS_C	440	624
IPR002625	Smr_dom	850	920

External Links

No external refs found!

LOC_Os04g58410.1 (LOC_Os04g58410)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation