LOC_Os04g56150.1 (LOC_Os04g56150)


Aliases : LOC_Os04g56150

Description : transcription factor (ERF)


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g56150.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00249140 evm_27.TU.AmTr_v1... Cell wall.cutin and suberin.biosynthesis... 0.03 OrthoFinder output from all 47 species
AMTR_s00095p00096190 CBF4, DREB1D,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.01 OrthoFinder output from all 47 species
AMTR_s00107p00095070 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AT2G22200 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G25820 No alias Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G14230 RAP2.2 related to AP2 2 0.03 OrthoFinder output from all 47 species
AT4G11140 CRF1 cytokinin response factor 1 0.04 OrthoFinder output from all 47 species
Adi_g045252 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aob_g26090 RAP2.11 transcription factor *(ERN1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00507 WIN1, SHN1 subgroup ERF-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02788 TINY2 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene00047.t1 TINY2, Aspi01Gene00047 subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Aspi01Gene03161.t1 Aspi01Gene03161 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene05372.t1 DEAR3, Aspi01Gene05372 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05660.t1 Aspi01Gene05660 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene05675.t1 Aspi01Gene05675 subgroup ERF-III transcription factor & original... 0.09 OrthoFinder output from all 47 species
Aspi01Gene09666.t1 TINY2, Aspi01Gene09666 subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Aspi01Gene17041.t1 Aspi01Gene17041 subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Aspi01Gene23161.t1 Aspi01Gene23161 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28739.t1 Aspi01Gene28739 subgroup ERF-V transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene32072.t1 Aspi01Gene32072 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene34430.t1 ATERF4, RAP2.5,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34458.t1 DEAR2, Aspi01Gene34458 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34481.t1 Aspi01Gene34481 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37405.t1 Aspi01Gene37405 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene48933.t1 RAP2.2, Aspi01Gene48933 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Aspi01Gene56610.t1 DREB26, Aspi01Gene56610 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene56611.t1 DREB26, Aspi01Gene56611 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene56617.t1 DEAR2, Aspi01Gene56617 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56618.t1 DEAR2, Aspi01Gene56618 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene58502.t1 Aspi01Gene58502 subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Aspi01Gene66121.t1 Aspi01Gene66121 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70898.t1 Aspi01Gene70898 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0011.g012465 RAP2.1 not classified & original description: CDS=1-1059 0.03 OrthoFinder output from all 47 species
Azfi_s0056.g034097 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.01 OrthoFinder output from all 47 species
Azfi_s0065.g035884 No alias subgroup ERF-V transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0149.g053251 No alias subgroup ERF-V transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s2254.g109997 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g13066 No alias subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G018900.1 ERF2, ATERF2,... subgroup ERF-VI transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ceric.13G085100.1 Ceric.13G085100 not classified & original description: pacid=50636474... 0.03 OrthoFinder output from all 47 species
Ceric.30G071700.1 HRE2, Ceric.30G071700 not classified & original description: pacid=50607972... 0.02 OrthoFinder output from all 47 species
Ceric.35G055900.1 Ceric.35G055900 subgroup ERF-IV/DREB2 transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g14308 No alias subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g20220 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g37743 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.01 OrthoFinder output from all 47 species
Dcu_g10630 DEAR1, CEJ1, ATERF#011 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.04 OrthoFinder output from all 47 species
Ehy_g21774 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01032961001 LEP RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
Gb_03368 No alias transcription factor (ERF). SHN-type cutin and suberin... 0.02 OrthoFinder output from all 47 species
Gb_19320 RAP2.12 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os02g10760.1 WIN1, SHN1,... transcription factor (ERF). SHN-type cutin and suberin... 0.01 OrthoFinder output from all 47 species
LOC_Os02g45420.1 LOC_Os02g45420 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
LOC_Os03g22170.1 HRE2, LOC_Os03g22170 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os04g46410.1 ERF38, ATERF38,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g09717.1 LOC_Os06g09717 Ethylene-responsive transcription factor ERF018... 0.06 OrthoFinder output from all 47 species
LOC_Os09g13940.2 LOC_Os09g13940 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os10g41330.1 ERF-6-6, ERF6,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os11g13840.1 tny, LOC_Os11g13840 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_10020434g0010 No alias Ethylene-responsive transcription factor ERF013... 0.1 OrthoFinder output from all 47 species
MA_12671g0020 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_214063g0010 No alias transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
MA_54341g0010 WIN1, SHN1 transcription factor (ERF). SHN-type cutin and suberin... 0.01 OrthoFinder output from all 47 species
MA_647924g0010 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_66742g0010 HRD transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Mp5g01050.1 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Mp5g02590.1 No alias transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Msp_g08809 CRF4 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g08810 CRF4 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g30400 TINY2 subgroup ERF-IV/DREB2 transcription factor & original... 0.03 OrthoFinder output from all 47 species
Msp_g43178 RAP2.9, DEAR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g36884 No alias subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g01623 No alias subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Pir_g47681 No alias subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g51435 CBF4, DREB1D transcription factor *(CBF/DREB1) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c16_13260V3.1 Pp3c16_13260 Integrase-type DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
Pp3c5_810V3.1 Pp3c5_810 Integrase-type DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
Pp3c5_820V3.1 Pp3c5_820 Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001285 No alias not classified & original description: CDS=1-1830 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006108 No alias not classified & original description: CDS=1-567 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010633 No alias not classified & original description: CDS=1-1278 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012398 DEAR1, CEJ1, ATERF#011 not classified & original description: CDS=1-1134 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013429 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016160 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016650 ERF38, ATERF38 subgroup ERF-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sam_g06091 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g38211 No alias subgroup ERF-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo38500 DREB2A, DREB2 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.06 OrthoFinder output from all 47 species
Solyc01g005630.3.1 RAP2.11, Solyc01g005630 transcription factor (ERF). transcription factor (ERN1) 0.01 OrthoFinder output from all 47 species
Solyc03g006320.1.1 ATERF4, RAP2.5,... transcription factor (ERF) 0.17 OrthoFinder output from all 47 species
Solyc04g080910.1.1 Solyc04g080910 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Solyc05g050790.3.1 ATERF13, ERF13,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc06g063070.3.1 RAP2.12, Solyc06g063070 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Solyc08g078410.2.1 Solyc08g078410 transcription factor (DREB) 0.17 OrthoFinder output from all 47 species
Zm00001e000611_P001 HRE1, Zm00001e000611 Ethylene-responsive transcription factor ERF073... 0.01 OrthoFinder output from all 47 species
Zm00001e003858_P001 Zm00001e003858 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e022016_P001 Zm00001e022016 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e023159_P001 Zm00001e023159 transcription factor (DREB) 0.08 OrthoFinder output from all 47 species
Zm00001e023816_P001 Zm00001e023816 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e023870_P001 RAP2.4, Zm00001e023870 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e033072_P001 RAP2.11, Zm00001e033072 transcription factor (ERF). transcription factor (ERN1) 0.02 OrthoFinder output from all 47 species
Zm00001e034661_P001 ERF110, Zm00001e034661 Ethylene-responsive transcription factor ERF115... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 2 50
No external refs found!