LOC_Os04g54390.1 (BFN1, ENDO1, LOC_Os04g54390)

Aliases : BFN1, ENDO1, LOC_Os04g54390

Description : Endonuclease 1 OS=Arabidopsis thaliana (sp|q9sxa6|endo1_arath : 417.0) & Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase acting on ester bond(50.3.1 : 400.4)

Gene families : OG0001546 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001546_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g54390.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G11190	BFN1, ENDO1	bifunctional nuclease i	0.03	OrthoFinder output from all 47 species
AT4G21600	ENDO5	endonuclease 5	0.05	OrthoFinder output from all 47 species
Adi_g051934	ENDO 2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ala_g04501	ENDO 2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ehy_g16169	ENDO 2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Gb_25885	ENDO4	Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase...	0.03	OrthoFinder output from all 47 species
MA_46530g0010	ENDO 2	Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase...	0.07	OrthoFinder output from all 47 species
MA_75204g0010	ENDO 2	Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase...	0.04	OrthoFinder output from all 47 species
Msp_g11812	ENDO 2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Nbi_g00823	ENDO 2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ore_g05848	ENDO 2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ore_g26679	ENDO 2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Pnu_g31869	ENDO4	EC_3.1 hydrolase acting on ester bond & original...	0.05	OrthoFinder output from all 47 species
Solyc02g078910.3.1	BFN1, ENDO1,...	Endonuclease 1 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Solyc05g009430.3.1	ENDO 2, Solyc05g009430	Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase...	0.03	OrthoFinder output from all 47 species
Spa_g08513	ENDO 2	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Spa_g51288	ENDO 2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Tin_g02432	ENDO 2	EC_3.1 hydrolase acTing on ester bond & original...	0.03	OrthoFinder output from all 47 species
Zm00001e004395_P002	BFN1, ENDO1,...	Endonuclease 1 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006308	DNA catabolic process	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003154	S1/P1nuclease	30	294

External Links

No external refs found!

LOC_Os04g54390.1 (BFN1, ENDO1, LOC_Os04g54390)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation