LOC_Os04g52560.1 (FRS5, LOC_Os04g52560)


Aliases : FRS5, LOC_Os04g52560

Description : transcription factor (FAR1)


Gene families : OG0002906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002906_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g52560.1

Target Alias Description ECC score Gene Family Method Actions
AT1G76320 FRS4 FAR1-related sequence 4 0.04 OrthoFinder output from all 47 species
AT3G22170 FHY3 far-red elongated hypocotyls 3 0.03 OrthoFinder output from all 47 species
AT4G38170 FRS9 FAR1-related sequence 9 0.03 OrthoFinder output from all 47 species
AT5G18960 FRS12 FAR1-related sequence 12 0.02 OrthoFinder output from all 47 species
GSVIVT01013441001 FRS9 RNA biosynthesis.transcriptional activation.FAR1... 0.05 OrthoFinder output from all 47 species
GSVIVT01015829001 FAR1 RNA biosynthesis.transcriptional activation.FAR1... 0.03 OrthoFinder output from all 47 species
GSVIVT01017368001 FRS6 RNA biosynthesis.transcriptional activation.FAR1... 0.04 OrthoFinder output from all 47 species
Solyc03g117520.3.1 FRS6, Solyc03g117520 transcription factor (FAR1) 0.03 OrthoFinder output from all 47 species
Solyc08g060840.1.1 FAR1, Solyc08g060840 transcription factor (FAR1). FRS-type red/far-red light... 0.05 OrthoFinder output from all 47 species
Solyc10g084220.3.1 FRS7, Solyc10g084220 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0005694 chromosome IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 380 474
IPR004330 FAR1_DNA_bnd_dom 200 283
No external refs found!