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Aliases : QRT3, LOC_Os04g52320
Description : polygalacturonase (QRT3)
Gene families : OG0004265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004265_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os04g52320.1 | |
| Cluster | HCCA: Cluster_151 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G20050 | QRT3 | Pectin lyase-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g16422 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g35331 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g67503 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g010377 | QRT3 | polygalacturonase *(QRT3) & original description: CDS=62-1624 | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.15G061400.1 | QRT3, Ceric.15G061400 | polygalacturonase *(QRT3) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.21G028400.1 | QRT3, Ceric.21G028400 | polygalacturonase *(QRT3) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g31759 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01012138001 | No alias | Cell wall.pectin.modification and... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01012139001 | QRT3 | Cell wall.pectin.modification and... | 0.05 | OrthoFinder output from all 47 species | |
| Len_g58007 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_739517g0010 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g29972 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g13496 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g13886 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g40884 | No alias | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g068400.3.1 | QRT3, Solyc02g068400 | polygalacturonase (QRT3) | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g33866 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g43106 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e006958_P005 | QRT3, Zm00001e006958 | polygalacturonase (QRT3) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | HCCA |
| MF | GO:0005484 | SNAP receptor activity | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006284 | base-excision repair | IEP | HCCA |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | HCCA |
| MF | GO:0009055 | electron transfer activity | IEP | HCCA |
| BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | HCCA |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | HCCA |
| MF | GO:0030674 | protein-macromolecule adaptor activity | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| MF | GO:0060090 | molecular adaptor activity | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |