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  5. LOC_Os04g52020.1

LOC_Os04g52020.1 (EMB1135, LOC_Os04g52020)


Aliases : EMB1135, LOC_Os04g52020

Description : Protein FORGETTER 1 OS=Arabidopsis thaliana (sp|f4if36|fgt1_arath : 1189.0)


Gene families : OG0002623 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002623_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g52020.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00037p00121600 EMB1135,... Protein FORGETTER 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G79350 EMB1135 RING/FYVE/PHD zinc finger superfamily protein 0.08 OrthoFinder output from all 47 species
Adi_g021474 EMB1135 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g16049 EMB1135 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g08125 EMB1135 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g59829 EMB1135 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64789.t1 EMB1135, Aspi01Gene64789 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene64793.t1 EMB1135, Aspi01Gene64793 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g04085 EMB1135 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre01.g053250 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre02.g095045 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g13353 EMB1135 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06216 EMB1135 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036703001 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
Gb_10957 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g16816 EMB1135 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_938199g0010 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g14790.1 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Ore_g15402 EMB1135 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g005490.4.1 EMB1135, Solyc10g005490 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g10872 EMB1135 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e040038_P001 EMB1135, Zm00001e040038 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e041616_P001 EMB1135, Zm00001e041616 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR026937 SBNO_Helicase_C_dom 303 591
IPR019787 Znf_PHD-finger 215 262
IPR039187 SNO_AAA 1 37
No external refs found!