LOC_Os04g49150.1 (AGL6, LOC_Os04g49150)

Aliases : AGL6, LOC_Os04g49150

Description : transcription factor (MADS/AGL)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g49150.1

Target	Alias	Description	ECC score	Gene Family Method
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from all 47 species
Aop_g33008	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene17806.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44619.t1	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s2186.g109823	No alias	not classified & original description: CDS=5-496	0.04	OrthoFinder output from all 47 species
Cba_g29409	AGL6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.15G037400.1	AGL7, AP1,...	MADS/AGL-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Dde_g25334	AGL4, SEP2	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os08g38590.1	AGL104, LOC_Os08g38590	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os09g32948.1	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_113509g0010	AGL104	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_1170g0010	AGL8, FUL	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_15122g0010	AGL16	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_19296g0010	AGL9, SEP3	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_25342g0010	AGL16	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_412147g0010	SOC1, AGL20, ATSOC1	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_770623g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_95674g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003429	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Solyc02g089200.4.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc05g051825.1.1	AGL104, Solyc05g051825	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc10g017630.3.1	SOC1, AGL20,...	MADS-box protein SOC1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Solyc12g038510.2.1	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Spa_g05139	AGL30	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e013738_P001	AGL32, TT16,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e019029_P001	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e027031_P001	PI, Zm00001e027031	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e027034_P001	PI, Zm00001e027034	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	15	62
IPR002487	TF_Kbox	92	177

External Links

No external refs found!

LOC_Os04g49150.1 (AGL6, LOC_Os04g49150)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation