1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g48050.1

LOC_Os04g48050.1 (LOC_Os04g48050)


Aliases : LOC_Os04g48050

Description : RING-H2-class E3 ligase


Gene families : OG0001080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001080_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g48050.1

Target Alias Description ECC score Gene Family Method Actions
AT1G12760 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.04 OrthoFinder output from all 47 species
Adi_g107638 No alias E3 ubiquitin ligase *(RIE1) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g51025 No alias E3 ubiquitin ligase *(RIE1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05874 No alias E3 ubiquitin ligase *(RIE1) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g02877 No alias E3 ubiquitin ligase *(RIE1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10765 No alias E3 ubiquitin ligase *(RIE1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g31213 No alias E3 ubiquitin ligase *(RIE1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02102 No alias E3 ubiquitin ligase *(RIE1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 267 309
No external refs found!