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  5. LOC_Os04g46100.1

LOC_Os04g46100.1 (LOC_Os04g46100)


Aliases : LOC_Os04g46100

Description : no hits & (original description: none)


Gene families : OG0007222 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007222_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g46100.1
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00209800 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Adi_g036487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0094.g043499 No alias not classified & original description: CDS=1-1809 0.03 OrthoFinder output from all 47 species
Cba_g01042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.33G028700.1 Ceric.33G028700 not classified & original description: pacid=50606542... 0.04 OrthoFinder output from all 47 species
Dcu_g16542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g31692 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g02635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g57144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020110 No alias not classified & original description: CDS=102-1706 0.03 OrthoFinder output from all 47 species
Spa_g05972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g14512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041364_P001 Zm00001e041364 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA

No InterPro domains available for this sequence

No external refs found!