1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g45690.1

LOC_Os04g45690.1 (LOC_Os04g45690)


Aliases : LOC_Os04g45690

Description : transcription factor (BBX-DBB)


Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g45690.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00215760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00250410 LZF1, STH3,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AMTR_s00182p00043350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT1G06040 STO B-box zinc finger family protein 0.05 OrthoFinder output from all 47 species
AT1G75540 STH2 salt tolerance homolog2 0.03 OrthoFinder output from all 47 species
AT2G47890 No alias B-box type zinc finger protein with CCT domain 0.05 OrthoFinder output from all 47 species
AT4G39070 No alias B-box zinc finger family protein 0.03 OrthoFinder output from all 47 species
Als_g28425 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01696 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08389.t1 LZF1, STH3,... BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32817.t1 Aspi01Gene32817 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45209.t1 LZF1, STH3,... BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g008055 LZF1, STH3, DBB3 BBX class-IV transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g10101 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.17G005800.1 STO, Ceric.17G005800 BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.31G000800.1 LZF1, STH3,... BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cre03.g182700 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g07621 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26676 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_00821 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g30217 STO BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04007 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14313 STO BBX class-IV transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18191 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19854 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g23534 STH2 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65956 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g110180.4.1 Solyc01g110180 transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species
Solyc12g089240.2.1 STH2, Solyc12g089240 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
Tin_g03245 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09563 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007388_P002 STH2, Zm00001e007388 transcription factor (BBX-DBB) 0.04 OrthoFinder output from all 47 species
Zm00001e041335_P001 Zm00001e041335 transcription factor (BBX-DBB) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 4 44
IPR000315 Znf_B-box 59 92
No external refs found!