LOC_Os04g41820.1 (LOC_Os04g41820)

Aliases : LOC_Os04g41820

Description : transcription factor (bZIP)

Gene families : OG0000155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000155_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g41820.1
Cluster	HCCA: Cluster_170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00190730	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bZIP...	0.02	OrthoFinder output from all 47 species
AMTR_s00185p00050380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bZIP...	0.02	OrthoFinder output from all 47 species
AMTR_s04408p00000200	ATBZIP34,...	RNA biosynthesis.transcriptional activation.bZIP...	0.03	OrthoFinder output from all 47 species
AT1G06850	AtbZIP52, bZIP52	basic leucine-zipper 52	0.02	OrthoFinder output from all 47 species
AT1G58110	No alias	Basic-leucine zipper (bZIP) transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT2G31370	No alias	Basic-leucine zipper (bZIP) transcription factor family protein	0.03	OrthoFinder output from all 47 species
Adi_g016089	No alias	bZIP class-L transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g082361	No alias	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g084110	No alias	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g108385	No alias	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g20590	ATBZIP34, BZIP34	bZIP class-L transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g20866	ATBZIP34, BZIP34	bZIP class-L transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g04767	ATBZIP34, BZIP34	bZIP class-L transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g08187	ATBZIP34, BZIP34	bZIP class-L transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03836	No alias	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g22106	ATBZIP61, BZIP61	bZIP class-L transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g47273	No alias	bZIP class-I transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g61562	No alias	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g14405	No alias	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g19337	No alias	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05724	No alias	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene13572.t1	Aspi01Gene13572	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene22172.t1	ATBZIP34,...	bZIP class-E transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene24743.t1	Aspi01Gene24743	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene47006.t1	Aspi01Gene47006	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene65467.t1	Aspi01Gene65467	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene69117.t1	Aspi01Gene69117	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0028.g023987	No alias	bZIP class-I transcription factor & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0543.g076379	ATBZIP34, BZIP34	bZIP class-L transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g03934	No alias	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.01G058900.1	Ceric.01G058900	bZIP class-I transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g05723	No alias	bZIP class-I transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g06323	No alias	bZIP class-I transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g21735	No alias	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01001783001	No alias	RNA biosynthesis.transcriptional activation.bZIP...	0.02	OrthoFinder output from all 47 species
GSVIVT01014246001	ATBZIP34, BZIP34	RNA biosynthesis.transcriptional activation.bZIP...	0.03	OrthoFinder output from all 47 species
GSVIVT01032683001	AtbZIP52, bZIP52	RNA biosynthesis.transcriptional activation.bZIP...	0.07	OrthoFinder output from all 47 species
Gb_07823	No alias	transcription factor (bZIP)	0.03	OrthoFinder output from all 47 species
Gb_24798	ATBZIP34, BZIP34	transcription factor (bZIP)	0.05	OrthoFinder output from all 47 species
Len_g08920	No alias	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g35260	No alias	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g04747	No alias	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_23986g0010	ATBZIP34, BZIP34	transcription factor (bZIP)	0.04	OrthoFinder output from all 47 species
Mp3g00600.1	No alias	transcription factor (bZIP)	0.02	OrthoFinder output from all 47 species
Msp_g01666	No alias	bZIP class-I transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g04246	No alias	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10276	ATBZIP34, BZIP34	bZIP class-L transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g28369	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g43734	No alias	bZIP class-I transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g43769	No alias	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g34707	No alias	bZIP class-L transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g43792	No alias	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g29774	AtbZIP52, bZIP52	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g06353	No alias	bZIP class-L transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g13333	ATBZIP34, BZIP34	bZIP class-L transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g44071	No alias	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001113	No alias	bZIP class-I transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014287	ATBZIP34, BZIP34	bZIP class-L transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019951	No alias	bZIP class-I transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s1006.g027904	No alias	bZIP class-I transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sam_g15891	No alias	bZIP class-L transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g19746	No alias	bZIP class-L transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g04255	No alias	bZIP class-L transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g39970	No alias	bZIP class-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g00780	No alias	bZIP class-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e003742_P001	Zm00001e003742	transcription factor (bZIP)	0.04	OrthoFinder output from all 47 species
Zm00001e007706_P001	Zm00001e007706	transcription factor (bZIP)	0.05	OrthoFinder output from all 47 species
Zm00001e010978_P001	AtbZIP52,...	transcription factor (bZIP)	0.07	OrthoFinder output from all 47 species
Zm00001e035856_P001	Zm00001e035856	transcription factor (bZIP)	0.04	OrthoFinder output from all 47 species
Zm00001e038237_P001	Zm00001e038237	transcription factor (bZIP)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004827	bZIP	270	328

External Links

No external refs found!

LOC_Os04g41820.1 (LOC_Os04g41820)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation