1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g41540.1

LOC_Os04g41540.1 (AGD11, LOC_Os04g41540)


Aliases : AGD11, LOC_Os04g41540

Description : Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica (sp|q0jc44|cml22_orysj : 335.0)


Gene families : OG0000205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000205_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g41540.1

Target Alias Description ECC score Gene Family Method Actions
AT4G12860 UNE14 EF hand calcium-binding protein family 0.02 OrthoFinder output from all 47 species
Adi_g006558 CML42 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11341 AGD11 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05225 AGD11 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20304 AGD11 calcium sensor *(CML) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g36968 UNE14 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51395 UNE14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59094 UNE14 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03909 AGD11 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34646.t1 CML42, Aspi01Gene34646 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34666.t1 UNE14, Aspi01Gene34666 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34915.t1 UNE14, Aspi01Gene34915 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40818.t1 UNE14, Aspi01Gene40818 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68621.t1 TCH3, ATCAL4,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0367.g066979 UNE14 calcium sensor *(CML) & original description: CDS=1-1074 0.03 OrthoFinder output from all 47 species
Cba_g07894 UNE14 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G067000.1 Ceric.17G067000 not classified & original description: pacid=50618804... 0.04 OrthoFinder output from all 47 species
Ceric.35G008400.1 CML42, Ceric.35G008400 calcium sensor *(CML) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g37155 UNE14 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_30178 UNE14 Calmodulin-like protein 6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_13199g0010 CML42 Probable calcium-binding protein CML27 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_18054g0010 CML43 Probable calcium-binding protein CML32 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_6883323g0010 UNE14 Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp6g18000.1 UNE14 Calmodulin-like protein 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g11820 UNE14 calcium sensor *(CML) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g25033 UNE14 calcium sensor *(CML) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g04586 UNE14 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28960 AGD11 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g03755 No alias calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15190 No alias calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Smo233632 UNE14 Calmodulin-like protein 7 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc07g007950.1.1 AGD11, Solyc07g007950 Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g16164 CML42 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47923 CML42 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51233 UNE14 calcium sensor *(CML) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 92 154
IPR002048 EF_hand_dom 179 242
No external refs found!