LOC_Os04g39440.1 (RAB2A, AT-RAB2,...)

Aliases : RAB2A, AT-RAB2, RAB-B1B, ATRAB-B1B, RABB1C, ATRABB1C, ATRAB2A, LOC_Os04g39440

Description : B-class RAB GTPase

Gene families : OG0001412 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001412_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g39440.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g055675	RAB2A, AT-RAB2,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000923.8	RAB2A, AT-RAB2,...	GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii	0.01	OrthoFinder output from all 47 species
Gb_15369	RAB2A, AT-RAB2,...	B-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Msp_g33803	RAB2A, AT-RAB2,...	B-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g01711	RAB2A, AT-RAB2,...	B-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0114.g020920	RAB2A, AT-RAB2,...	B-class RAB GTPase & original description: CDS=1183-1821	0.03	OrthoFinder output from all 47 species
Sam_g00874	No alias	B-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g093530.4.1	ATRABB1B,...	B-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	HCCA
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	19	172

External Links

No external refs found!