LOC_Os04g38780.1 (AGL16, LOC_Os04g38780)

Aliases : AGL16, LOC_Os04g38780

Description : MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica (sp|q6ep49|mad27_orysj : 159.0)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g38780.1
Cluster	HCCA: Cluster_110

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00270400	AGL32, TT16,...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Adi_g072612	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g06477	AGL16	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g28162	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g17970	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene06309.t1	Aspi01Gene06309	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene17809.t1	AGL6, Aspi01Gene17809	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene17818.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g23820	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g41755	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.12G051800.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.08	OrthoFinder output from all 47 species
Ceric.16G027500.1	AGL16, Ceric.16G027500	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.27G057900.1	STK, AGL11,...	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dde_g03632	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g15929	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01008139001	AGL2, SEP1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01008806001	PI	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01010218001	AGL62	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01012250001	AGL7, AP1	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01018450001	AGL6	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01036549001	AGL7, AP1	RNA biosynthesis.transcriptional activation.MADS box...	0.05	OrthoFinder output from all 47 species
Len_g09144	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g16023	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g33017	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g41502	ANR1, AGL44	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g14037	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g16827	AGL21	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g37644	AGL21	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_10432817g0010	SVP, AGL22	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_19007g0020	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_206542g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_32676g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_6544g0010	STK, AGL11	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.03	OrthoFinder output from all 47 species
Mp4g12490.1	AGL67	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Msp_g44299	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g04651	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g16569	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g16570	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g51490	AGL24	regulatory protein *(SVP/AGL24) of floral meristem...	0.02	OrthoFinder output from all 47 species
Pir_g54533	MAF2, AGL31	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g11923	AGL21	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g28969	AGL104	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g41504	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g60352	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g62136	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g13248	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g13249	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g18903	No alias	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g26111	No alias	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g27238	No alias	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Spa_g02544	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Spa_g14680	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g28690	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g55783	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	78	139

External Links

No external refs found!

LOC_Os04g38780.1 (AGL16, LOC_Os04g38780)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation