LOC_Os04g38670.1 (LOC_Os04g38670)


Aliases : LOC_Os04g38670

Description : Amino acid transporter AVT1I OS=Arabidopsis thaliana (sp|f4j1q9|avt1i_arath : 114.0)


Gene families : OG0000278 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000278_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g38670.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00061580 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
Adi_g017266 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46742 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g17850 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47786 No alias solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g50908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08482 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31437 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68476 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10985.t1 Aspi01Gene10985 solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010795 No alias solute transporter *(AAAP) & original description: CDS=35-1210 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g010835 No alias solute transporter *(AAAP) & original description: CDS=1-1098 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029906 No alias solute transporter *(AAAP) & original description: CDS=1-1626 0.03 OrthoFinder output from all 47 species
Azfi_s0120.g046809 No alias solute transporter *(AAAP) & original description: CDS=42-1736 0.03 OrthoFinder output from all 47 species
Ceric.31G038800.1 Ceric.31G038800 solute transporter *(AAAP) & original description:... 0.05 OrthoFinder output from all 47 species
Dac_g14297 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g31336 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g28882 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019976001 No alias Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
GSVIVT01033627001 No alias Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
Gb_27840 No alias solute transporter (AAAP) 0.04 OrthoFinder output from all 47 species
LOC_Os01g41420.1 LOC_Os01g41420 solute transporter (AAAP) 0.04 OrthoFinder output from all 47 species
MA_10426730g0010 No alias solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species
MA_131191g0010 No alias solute transporter (AAAP) 0.02 OrthoFinder output from all 47 species
MA_60453g0010 No alias solute transporter (AAAP) 0.05 OrthoFinder output from all 47 species
Msp_g14582 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g19411 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13243 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19449 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16581 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31949 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Smo405495 No alias Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
Smo438611 No alias Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
Spa_g40129 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20653 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008656_P002 Zm00001e008656 solute transporter (AAAP) 0.02 OrthoFinder output from all 47 species
Zm00001e030719_P001 Zm00001e030719 solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008272 sulfate transport IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015116 sulfate transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR013057 AA_transpt_TM 4 153
No external refs found!