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  5. LOC_Os04g31040.1

LOC_Os04g31040.1 (NPQ1, AVDE1, LOC_Os04g31040)


Aliases : NPQ1, AVDE1, LOC_Os04g31040

Description : violaxanthin de-epoxidase. violaxanthin de-epoxidase (VDE)


Gene families : OG0006528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006528_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g31040.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00117p00058770 NPQ1, AVDE1,... Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder output from all 47 species
Adi_g112593 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01777 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01565 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19248 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07958 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11651 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026405001 NPQ1, AVDE1 Secondary metabolism.terpenoids.terpenoid... 0.04 OrthoFinder output from all 47 species
Msp_g12644 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019899 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description:... 0.02 OrthoFinder output from all 47 species
Solyc04g050930.3.1 NPQ1, AVDE1,... violaxanthin de-epoxidase. violaxanthin de-epoxidase (VDE) 0.03 OrthoFinder output from all 47 species
Tin_g08581 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e008403_P001 NPQ1, AVDE1,... violaxanthin de-epoxidase. violaxanthin de-epoxidase (VDE) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEA Interproscan
MF GO:0046422 violaxanthin de-epoxidase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010788 VDE_dom 126 366
No external refs found!