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  5. LOC_Os04g28050.1

LOC_Os04g28050.1 (LOC_Os04g28050)


Aliases : LOC_Os04g28050

Description : CENH3-recruitment factor (KNL2/Mis18)


Gene families : OG0002725 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002725_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g28050.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g030213 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18676 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12068 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29417 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g11386 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50900 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07078 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g19080 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA

No InterPro domains available for this sequence

No external refs found!