- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LOC_Os04g25410
Description : Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana (sp|o22714|ppr86_arath : 552.0)
Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00095p00019470 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80270,... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00095p00027730 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80270,... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00135p00094440 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g09450,... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G02370 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT1G60770 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT1G80270 | PPR596 | PENTATRICOPEPTIDE REPEAT 596 | 0.06 | OrthoFinder output from all 47 species | |
| AT4G01990 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT4G02820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g016255 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g030656 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g055159 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g059294 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g09907 | No alias | RNA editing factor *(POCO) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0251.g060292 | No alias | RNA editing factor *(POCO) & original description: CDS=143-2071 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g11231 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.17G065300.1 | Ceric.17G065300 | RNA editing factor *(POCO) & original description:... | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g10643 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g21533 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g01745 | PPR596 | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08858 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g03895 | No alias | RNA editing factor *(POCO) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01002065001 | No alias | Pentatricopeptide repeat-containing protein At4g21705,... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01006654001 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01018303001 | No alias | Pentatricopeptide repeat-containing protein At1g02150... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01020533001 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01020534001 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01031246001 | No alias | Pentatricopeptide repeat-containing protein At4g01990,... | 0.08 | OrthoFinder output from all 47 species | |
| GSVIVT01033642001 | No alias | Pentatricopeptide repeat-containing protein At1g80270,... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_03507 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_09452 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_20238 | No alias | RNA editing factor (POCO) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_27873 | No alias | RNA editing factor (POCO) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g55310.1 | LOC_Os02g55310 | Pentatricopeptide repeat-containing protein At5g27460... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g25974 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g07782 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_492314g0010 | No alias | RNA editing factor (POCO) | 0.04 | OrthoFinder output from all 47 species | |
| MA_7558g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | OrthoFinder output from all 47 species | |
| MA_77400g0010 | No alias | Pentatricopeptide repeat-containing protein At1g15480,... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g09807 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g18305 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g29727 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0231.g026432 | No alias | RNA editing factor *(POCO) & original description: CDS=165-2177 | 0.02 | OrthoFinder output from all 47 species | |
| Smo406783 | PPR596 | Pentatricopeptide repeat-containing protein At1g80270,... | 0.02 | OrthoFinder output from all 47 species | |
| Smo421992 | No alias | Pentatricopeptide repeat-containing protein At3g15590,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g078330.3.1 | Solyc02g078330 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.09 | OrthoFinder output from all 47 species | |
| Solyc06g005140.3.1 | Solyc06g005140 | Pentatricopeptide repeat-containing protein At4g02820,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g054090.3.1 | Solyc07g054090 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g006380.2.1 | Solyc11g006380 | Pentatricopeptide repeat-containing protein At1g60770... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc12g020050.2.1 | PPR596, Solyc12g020050 | RNA editing factor (POCO) | 0.1 | OrthoFinder output from all 47 species | |
| Spa_g11271 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g14511 | No alias | RNA ediTing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g37476 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e012594_P001 | Zm00001e012594 | Pentatricopeptide repeat-containing protein At4g21705,... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e017396_P001 | PPR596, Zm00001e017396 | RNA editing factor (POCO) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e025470_P001 | PPR596, Zm00001e025470 | RNA editing factor (POCO) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e026211_P002 | Zm00001e026211 | Pentatricopeptide repeat-containing protein At1g02370,... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0007034 | vacuolar transport | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0010181 | FMN binding | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| BP | GO:0030488 | tRNA methylation | IEP | HCCA |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| CC | GO:0034708 | methyltransferase complex | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| No external refs found! |