LOC_Os04g18090.1 (HIS1-3, LOC_Os04g18090)

Aliases : HIS1-3, LOC_Os04g18090

Description : linker histone (H1)

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g18090.1
Cluster	HCCA: Cluster_180

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00112340	HIS1-3,...	Chromatin organisation.histones.H1 linker histone	0.06	OrthoFinder output from all 47 species
AMTR_s00185p00055680	HIS1-3,...	Chromatin organisation.histones.H1 linker histone	0.03	OrthoFinder output from all 47 species
AT1G06760	No alias	winged-helix DNA-binding transcription factor family protein	0.22	OrthoFinder output from all 47 species
AT2G30620	No alias	winged-helix DNA-binding transcription factor family protein	0.11	OrthoFinder output from all 47 species
Adi_g012251	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g052669	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g23326	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03555	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g09382	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g33433	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g43401	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05135	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14110	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g36461	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene25496.t1	HIS1-3, Aspi01Gene25496	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0049.g030788	No alias	linker histone *(H1) & original description: CDS=1-786	0.08	OrthoFinder output from all 47 species
Cba_g50410	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.05G101000.1	HIS1-3, Ceric.05G101000	linker histone *(H1) & original description:...	0.07	OrthoFinder output from all 47 species
Ceric.17G067800.1	HIS1-3, Ceric.17G067800	linker histone *(H1) & original description:...	0.07	OrthoFinder output from all 47 species
Ceric.34G011100.1	HIS1-3, Ceric.34G011100	linker histone *(H1) & original description:...	0.09	OrthoFinder output from all 47 species
Ceric.34G044200.1	Ceric.34G044200	linker histone *(H1) & original description:...	0.06	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.23	OrthoFinder output from all 47 species
Dac_g20797	HIS1-3	linker histone *(H1) & original description: none	0.07	OrthoFinder output from all 47 species
Dcu_g00585	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g02276	No alias	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g23302	No alias	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g05343	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05478	No alias	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g10146	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10325	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01028074001	No alias	Chromatin organisation.histones.H1 linker histone	0.04	OrthoFinder output from all 47 species
Gb_02738	No alias	linker histone (H1)	0.2	OrthoFinder output from all 47 species
Gb_03348	HIS1-3	linker histone (H1)	0.08	OrthoFinder output from all 47 species
Len_g09311	HIS1-3	linker histone *(H1) & original description: none	0.01	OrthoFinder output from all 47 species
Len_g14042	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g23782	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g54319	No alias	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
MA_102457g0010	No alias	linker histone (H1)	0.09	OrthoFinder output from all 47 species
MA_10428525g0020	No alias	linker histone (H1)	0.04	OrthoFinder output from all 47 species
MA_10436125g0010	HIS1-3	linker histone (H1)	0.05	OrthoFinder output from all 47 species
MA_10436125g0020	ATTRB1, TRB1	linker histone (H1)	0.03	OrthoFinder output from all 47 species
MA_11137g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_11231g0010	HIS1-3	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_500183g0010	HIS1-3	linker histone (H1)	0.12	OrthoFinder output from all 47 species
Mp6g03150.1	HIS1-3	linker histone (H1)	0.1	OrthoFinder output from all 47 species
Msp_g09818	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g12026	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g04093	HIS1-3	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g10947	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c18_14270V3.1	Pp3c18_14270	winged-helix DNA-binding transcription factor family protein	0.02	OrthoFinder output from all 47 species
Ppi_g59703	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11041	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11042	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc09g066100.3.1	Solyc09g066100	linker histone (H1)	0.1	OrthoFinder output from all 47 species
Solyc09g083380.4.1	Solyc09g083380	linker histone (H1)	0.17	OrthoFinder output from all 47 species
Spa_g09322	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g09323	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g09324	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g18792	HIS1-3	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g50934	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g50935	HIS1-3	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g01715	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e006018_P006	Zm00001e006018	linker histone (H1)	0.05	OrthoFinder output from all 47 species
Zm00001e007189_P001	HIS1-3, Zm00001e007189	linker histone (H1)	0.11	OrthoFinder output from all 47 species
Zm00001e011857_P001	Zm00001e011857	linker histone (H1)	0.05	OrthoFinder output from all 47 species
Zm00001e011859_P001	Zm00001e011859	linker histone (H1)	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	34	101

External Links

No external refs found!

LOC_Os04g18090.1 (HIS1-3, LOC_Os04g18090)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation