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  5. LOC_Os04g02870.1

LOC_Os04g02870.1 (At-RS31, RS31, RSP31,...)


Aliases : At-RS31, RS31, RSP31, ATRSP31, LOC_Os04g02870

Description : RS31/40/41 RNA splicing factor


Gene families : OG0002134 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g02870.1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000852.9 At-RS31, RS31,... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Cre16.g674250 At-RS31, RS31,... RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Dac_g29181 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g38725 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07755 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g091750.3.1 At-RS41, RS41,... RS31/40/41 RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 4 61
IPR000504 RRM_dom 96 158
No external refs found!