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  5. LOC_Os04g01720.1

LOC_Os04g01720.1 (ATVDAC1, VDAC1, LOC_Os04g01720)


Aliases : ATVDAC1, VDAC1, LOC_Os04g01720

Description : Mitochondrial outer membrane protein porin 5 OS=Oryza sativa subsp. japonica (sp|q84p97|vdac5_orysj : 114.0)


Gene families : OG0011429 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011429_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g01720.1
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g27350.1 PTB3, LOC_Os02g27350 Mitochondrial outer membrane protein porin 5 OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os08g23280.1 PTB3, LOC_Os08g23280 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os11g44330.1 LOC_Os11g44330 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!