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  5. LOC_Os03g63940.1

LOC_Os03g63940.1 (ATSNF4, SNF4, LOC_Os03g63940)


Aliases : ATSNF4, SNF4, LOC_Os03g63940

Description : regulatory subunit betagamma of SNF1-related SnRK1 kinase complex. regulatory subunit betagamma of SnRK1 kinase complex


Gene families : OG0002124 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002124_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g63940.1

Target Alias Description ECC score Gene Family Method Actions
Ala_g10631 ATSNF4, SNF4 regulatory subunit betagamma of SnRK1 kinase complex &... 0.02 OrthoFinder output from all 47 species
Aob_g07865 ATSNF4, SNF4 regulatory subunit betagamma of SnRK1 kinase complex &... 0.02 OrthoFinder output from all 47 species
Aop_g04238 ATSNF4, SNF4 regulatory subunit betagamma of SnRK1 kinase complex &... 0.02 OrthoFinder output from all 47 species
Aop_g09815 ATSNF4, SNF4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09816 ATSNF4, SNF4 regulatory subunit betagamma of SnRK1 kinase complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020610.26 ATSNF4, SNF4 Multi-process regulation.SnRK1 metabolic regulator... 0.01 OrthoFinder output from all 47 species
GSVIVT01017767001 ATSNF4, SNF4 Multi-process regulation.SnRK1 metabolic regulator... 0.03 OrthoFinder output from all 47 species
Mp7g16670.1 ATSNF4, SNF4 regulatory subunit betagamma of SNF1-related SnRK1... 0.02 OrthoFinder output from all 47 species
Pnu_g06395 ATSNF4, SNF4 regulatory subunit betagamma of SnRK1 kinase complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006991 ATSNF4, SNF4 regulatory subunit betagamma of SnRK1 kinase complex &... 0.03 OrthoFinder output from all 47 species
Sam_g11322 No alias regulatory subunit betagamma of SnRK1 kinase complex &... 0.04 OrthoFinder output from all 47 species
Sam_g52459 No alias regulatory subunit betagamma of SnRK1 kinase complex &... 0.04 OrthoFinder output from all 47 species
Smo229585 ATSNF4, SNF4 Multi-process regulation.SnRK1 metabolic regulator... 0.03 OrthoFinder output from all 47 species
Solyc01g067590.3.1 ATSNF4, SNF4,... regulatory subunit betagamma of SNF1-related SnRK1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0070531 BRCA1-A complex IEP HCCA
CC GO:0070552 BRISC complex IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR032640 AMPK1_CBM 22 102
IPR000644 CBS_dom 359 404
IPR000644 CBS_dom 446 492
No external refs found!