LOC_Os03g62720.1 (LOC_Os03g62720)


Aliases : LOC_Os03g62720

Description : component MTR3/RRP41L of exosome EXO9 core complex


Gene families : OG0006439 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006439_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g62720.1

Target Alias Description ECC score Gene Family Method Actions
Cre17.g697624 No alias RNA processing.RNA decay.exosome complex.EXO9 core... 0.03 OrthoFinder output from all 47 species
MA_10430923g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_128453g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g19580.1 No alias component MTR3/RRP41L of exosome EXO9 core complex 0.02 OrthoFinder output from all 47 species
Zm00001e035628_P002 Zm00001e035628 component MTR3/RRP41L of exosome EXO9 core complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR001247 ExoRNase_PH_dom1 48 171
IPR015847 ExoRNase_PH_dom2 175 236
No external refs found!