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  5. LOC_Os03g62720.1

LOC_Os03g62720.1 (LOC_Os03g62720)


Aliases : LOC_Os03g62720

Description : component MTR3/RRP41L of exosome EXO9 core complex


Gene families : OG0006439 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g62720.1

Target Alias Description ECC score Gene Family Method Actions
Cre17.g697624 No alias RNA processing.RNA decay.exosome complex.EXO9 core... 0.03 OrthoFinder output from all 47 species
MA_10430923g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_128453g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g19580.1 No alias component MTR3/RRP41L of exosome EXO9 core complex 0.02 OrthoFinder output from all 47 species
Zm00001e035628_P002 Zm00001e035628 component MTR3/RRP41L of exosome EXO9 core complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR001247 ExoRNase_PH_dom1 48 171
IPR015847 ExoRNase_PH_dom2 175 236
No external refs found!