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  5. LOC_Os03g62630.1

LOC_Os03g62630.1 (LOC_Os03g62630)


Aliases : LOC_Os03g62630

Description : component psRPS6 of small ribosomal subunit proteome


Gene families : OG0003772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003772_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g62630.1
Cluster HCCA: Cluster_59

  • Edge Color
    • Target Alias Description ECC score Gene Family Method Actions
    AMTR_s00021p00220150 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
    AT1G64510 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.26 OrthoFinder output from all 47 species
    Adi_g019564 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
    Aev_g04389 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
    Ala_g02976 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
    Als_g05365 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
    Als_g19098 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
    Aob_g08781 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
    Aop_g30964 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
    Azfi_s0051.g031290 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
    Cba_g26011 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
    Ceric.10G083400.1 Ceric.10G083400 component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
    Ceric.32G022300.1 Ceric.32G022300 component *(uS6c) of small plastid ribosomal-subunit... 0.22 OrthoFinder output from all 47 species
    Cre12.g520600 No alias Protein biosynthesis.organelle translation... 0.1 OrthoFinder output from all 47 species
    Dac_g02644 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
    Dcu_g40728 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
    Dde_g06910 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
    Ehy_g04427 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
    GSVIVT01019593001 No alias Protein biosynthesis.organelle translation... 0.24 OrthoFinder output from all 47 species
    Gb_07402 No alias component psRPS6 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
    Gb_07403 No alias component psRPS6 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
    Len_g38836 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
    Lfl_g06876 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
    MA_10429326g0010 No alias component psRPS6 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
    Mp4g07210.1 No alias component psRPS6 of small ribosomal subunit proteome 0.21 OrthoFinder output from all 47 species
    Msp_g00928 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
    Nbi_g25871 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
    Ore_g08524 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
    Ore_g16705 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
    Pir_g00320 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
    Pnu_g10315 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
    Ppi_g06171 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
    Sacu_v1.1_s0027.g009778 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
    Sam_g19470 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
    Smo58368 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
    Solyc08g082690.2.1 Solyc08g082690 component psRPS6 of small ribosomal subunit proteome 0.17 OrthoFinder output from all 47 species
    Spa_g17715 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
    Spa_g37875 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
    Tin_g06363 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species

    Type GO Term Name Evidence Source
    MF GO:0003735 structural constituent of ribosome IEA Interproscan
    CC GO:0005840 ribosome IEA Interproscan
    BP GO:0006412 translation IEA Interproscan
    MF GO:0019843 rRNA binding IEA Interproscan
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    Type GO Term Name Evidence Source
    MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
    MF GO:0005509 calcium ion binding IEP HCCA
    MF GO:0008483 transaminase activity IEP HCCA
    CC GO:0009521 photosystem IEP HCCA
    CC GO:0009523 photosystem II IEP HCCA
    CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
    BP GO:0010207 photosystem II assembly IEP HCCA
    BP GO:0015979 photosynthesis IEP HCCA
    MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
    MF GO:0016859 cis-trans isomerase activity IEP HCCA
    CC GO:0019898 extrinsic component of membrane IEP HCCA
    BP GO:0043933 protein-containing complex organization IEP HCCA
    MF GO:0051536 iron-sulfur cluster binding IEP HCCA
    MF GO:0051540 metal cluster binding IEP HCCA
    MF GO:0051920 peroxiredoxin activity IEP HCCA
    BP GO:0065003 protein-containing complex assembly IEP HCCA
    CC GO:0098796 membrane protein complex IEP HCCA
    CC GO:1902494 catalytic complex IEP HCCA
    CC GO:1990204 oxidoreductase complex IEP HCCA
    InterPro domains Description Start Stop
    IPR000529 Ribosomal_S6 113 212
    No external refs found!