LOC_Os03g62240.1 (LOC_Os03g62240)

Aliases : LOC_Os03g62240

Description : transcription factor (mTERF)

Gene families : OG0006555 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006555_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g62240.1

Target	Alias	Description	ECC score	Gene Family Method
Aob_g11955	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene09124.t1	Aspi01Gene09124	mTERF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.24G048200.1	Ceric.24G048200	mTERF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021318.25	No alias	RNA biosynthesis.organelle...	0.01	OrthoFinder output from all 47 species
Cre10.g445100	No alias	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
Gb_41795	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_191994g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Mp5g01460.1	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Nbi_g00558	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g30699	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g18266	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g15492	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g15493	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006303_P001	Zm00001e006303	transcription factor (mTERF)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	132	196

External Links

No external refs found!

LOC_Os03g62240.1 (LOC_Os03g62240)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation