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  5. LOC_Os03g60600.1

LOC_Os03g60600.1 (LOC_Os03g60600)


Aliases : LOC_Os03g60600

Description : no hits & (original description: none)


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g60600.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Adi_g017565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g14043 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012121 No alias not classified & original description: CDS=1-669 0.03 OrthoFinder output from all 47 species
Ceric.28G054200.1 Ceric.28G054200 not classified & original description: pacid=50571012... 0.03 OrthoFinder output from all 47 species
GSVIVT01009823001 No alias Cold shock protein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc10g054330.3.1 Solyc10g054330 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
CC GO:0000145 exocyst IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 157 172
IPR001878 Znf_CCHC 78 92
IPR001878 Znf_CCHC 96 112
IPR001878 Znf_CCHC 226 241
IPR001878 Znf_CCHC 115 131
IPR001878 Znf_CCHC 135 150
IPR001878 Znf_CCHC 174 191
No external refs found!