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  5. LOC_Os03g58700.1

LOC_Os03g58700.1 (VPS35B, LOC_Os03g58700)


Aliases : VPS35B, LOC_Os03g58700

Description : component VPS35 of Retromer protein recycling complex


Gene families : OG0003496 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003496_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g58700.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00052p00172760 VPS35B,... Vesicle trafficking.endomembrane trafficking.protein... 0.03 OrthoFinder output from all 47 species
AT2G17790 ZIP3, VPS35A VPS35 homolog A 0.06 OrthoFinder output from all 47 species
AT3G51310 VPS35C VPS35 homolog C 0.05 OrthoFinder output from all 47 species
Adi_g011699 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Aev_g16183 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.06 OrthoFinder output from all 47 species
Aop_g01821 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.04 OrthoFinder output from all 47 species
Ceric.32G010800.1 VPS35B, Ceric.32G010800 component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Ceric.32G026000.1 VPS35B, Ceric.32G026000 component *(VPS35) of Retromer protein recycling complex... 0.09 OrthoFinder output from all 47 species
Cre01.g029650 ZIP3, VPS35A Vesicle trafficking.endomembrane trafficking.protein... 0.02 OrthoFinder output from all 47 species
Dcu_g44008 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.12 OrthoFinder output from all 47 species
GSVIVT01009948001 VPS35B Vesicle trafficking.endomembrane trafficking.protein... 0.04 OrthoFinder output from all 47 species
Gb_38584 VPS35B component VPS35 of Retromer protein recycling complex 0.03 OrthoFinder output from all 47 species
Lfl_g08397 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.1 OrthoFinder output from all 47 species
MA_9038g0010 ZIP3, VPS35A component VPS35 of Retromer protein recycling complex 0.03 OrthoFinder output from all 47 species
Msp_g00699 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Nbi_g11981 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.06 OrthoFinder output from all 47 species
Ore_g08613 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Ppi_g04632 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Sam_g29536 No alias component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Smo167991 VPS35B Vesicle trafficking.endomembrane trafficking.protein... 0.03 OrthoFinder output from all 47 species
Solyc02g083560.3.1 ZIP3, VPS35A,... component VPS35 of Retromer protein recycling complex 0.1 OrthoFinder output from all 47 species
Solyc03g033400.4.1 ZIP3, VPS35A,... component VPS35 of Retromer protein recycling complex 0.09 OrthoFinder output from all 47 species
Spa_g15075 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.06 OrthoFinder output from all 47 species
Tin_g02135 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.05 OrthoFinder output from all 47 species
Zm00001e006031_P002 VPS35B, Zm00001e006031 component VPS35 of Retromer protein recycling complex 0.17 OrthoFinder output from all 47 species
Zm00001e011849_P003 VPS35B, Zm00001e011849 component VPS35 of Retromer protein recycling complex 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0030906 retromer, cargo-selective complex IEA Interproscan
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR005378 Vps35 13 749
No external refs found!