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  5. LOC_Os03g53280.1

LOC_Os03g53280.1 (SPI, LOC_Os03g53280)


Aliases : SPI, LOC_Os03g53280

Description : Protein SPIRRIG OS=Arabidopsis thaliana (sp|f4hzb2|bcha1_arath : 4457.0)


Gene families : OG0003198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g53280.1

Target Alias Description ECC score Gene Family Method Actions
AT1G03060 SPI Beige/BEACH domain ;WD domain, G-beta repeat protein 0.05 OrthoFinder output from all 47 species
AT4G02660 No alias Beige/BEACH domain ;WD domain, G-beta repeat protein 0.08 OrthoFinder output from all 47 species
Ala_g19813 SPI not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g30609 SPI not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G088100.1 SPI, Ceric.14G088100 not classified & original description: pacid=50633229... 0.03 OrthoFinder output from all 47 species
GSVIVT01003123001 SPI BEACH domain-containing protein A2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Mp2g15880.1 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0219.g026126 SPI not classified & original description: CDS=210-10721 0.03 OrthoFinder output from all 47 species
Smo432626 SPI Protein SPIRRIG OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc09g065700.3.1 SPI, Solyc09g065700 Protein SPIRRIG OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Zm00001e005644_P001 SPI, Zm00001e005644 Protein SPIRRIG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 3332 3361
IPR001680 WD40_repeat 3378 3410
IPR000409 BEACH_dom 2969 3248
IPR023362 PH-BEACH_dom 2877 2930
No external refs found!