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  5. LOC_Os03g52980.1

LOC_Os03g52980.1 (LOC_Os03g52980)


Aliases : LOC_Os03g52980

Description : Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa subsp. japonica (sp|q69nk8|c3h59_orysj : 82.0)


Gene families : OG0003680 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003680_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g52980.1

Target Alias Description ECC score Gene Family Method Actions
AT1G56290 No alias CwfJ-like family protein 0.04 OrthoFinder output from all 47 species
Aev_g27547 No alias CWF19-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Ceric.26G021200.1 Ceric.26G021200 CWF19-type post-transcriptionally regulatory factor &... 0.05 OrthoFinder output from all 47 species
Cre17.g741550 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01018130001 No alias Zinc finger CCCH domain-containing protein 59 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Gb_04370 No alias Zinc finger CCCH domain-containing protein 64... 0.03 OrthoFinder output from all 47 species
MA_139546g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g12707 No alias CWF19-type post-transcriptionally regulatory factor &... 0.04 OrthoFinder output from all 47 species
Zm00001e005620_P001 Zm00001e005620 Zinc finger CCCH domain-containing protein 59 OS=Oryza... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006768 Cwf19-like_C_dom-1 531 650
IPR006767 Cwf19-like_C_dom-2 659 755
No external refs found!