1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g52770.1

LOC_Os03g52770.1 (LOC_Os03g52770)


Aliases : LOC_Os03g52770

Description : component VPS51/UNH of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes


Gene families : OG0003991 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003991_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g52770.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT4G02030 No alias Vps51/Vps67 family (components of vesicular transport) protein 0.03 OrthoFinder output from all 47 species
Aev_g09966 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Ala_g06971 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Als_g19919 No alias component *(VPS51/UNH) of GARP/EARP... 0.09 OrthoFinder output from all 47 species
Cba_g11605 No alias component *(VPS51/UNH) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ceric.34G060300.1 Ceric.34G060300 component *(VPS51/UNH) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Ceric.37G013400.1 Ceric.37G013400 component *(VPS51/UNH) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Cre09.g404650 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.04 OrthoFinder output from all 47 species
Dcu_g16393 No alias component *(VPS51/UNH) of GARP/EARP... 0.12 OrthoFinder output from all 47 species
GSVIVT01028119001 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.06 OrthoFinder output from all 47 species
Gb_16420 No alias component VPS51/UNH of GARP/EARP... 0.09 OrthoFinder output from all 47 species
Len_g49922 No alias component *(VPS51/UNH) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Lfl_g03317 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Mp6g05400.1 No alias component VPS51/UNH of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Msp_g26157 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Ore_g42933 No alias component *(VPS51/UNH) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Pir_g11809 No alias component *(VPS51/UNH) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Pp3c12_23510V3.1 Pp3c12_23510 Vps51/Vps67 family (components of vesicular transport) protein 0.03 OrthoFinder output from all 47 species
Sam_g29562 No alias component *(VPS51/UNH) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Smo178902 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.14 OrthoFinder output from all 47 species
Smo440937 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.13 OrthoFinder output from all 47 species
Solyc06g009650.3.1 Solyc06g009650 component VPS51/UNH of GARP/EARP... 0.15 OrthoFinder output from all 47 species
Spa_g06241 No alias component *(VPS51/UNH) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Tin_g04684 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Zm00001e012075_P003 Zm00001e012075 component VPS51/UNH of GARP/EARP... 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0097354 prenylation IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!