1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g52700.1

LOC_Os03g52700.1 (HOS1, LOC_Os03g52700)


Aliases : HOS1, LOC_Os03g52700

Description : ELYS scaffold nucleoporin of nuclear pore complex


Gene families : OG0005065 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005065_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g52700.1

Target Alias Description ECC score Gene Family Method Actions
AT2G39810 HOS1 ubiquitin-protein ligases 0.07 OrthoFinder output from all 47 species
Adi_g105450 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Ala_g10365 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Aop_g13573 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009860 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Cba_g25679 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Cba_g65792 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Ceric.36G007400.1 HOS1, Ceric.36G007400 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
Cre16.g683437 No alias No description available 0.03 OrthoFinder output from all 47 species
Ehy_g07914 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01005813001 HOS1 Protein translocation.nucleus.nucleocytoplasmic... 0.06 OrthoFinder output from all 47 species
MA_10431906g0010 HOS1 ELYS scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
MA_573521g0010 HOS1 ELYS scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Pir_g10456 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Ppi_g01205 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Sam_g19447 No alias scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Solyc08g078320.3.1 HOS1, Solyc08g078320 ELYS scaffold nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species
Spa_g09103 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
Tin_g16985 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Zm00001e012079_P002 HOS1, Zm00001e012079 ELYS scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR025151 ELYS_dom 271 551
No external refs found!